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ISSN No. 2454-6186 | DOI: 10.47772/IJRISS | Volume IX Issue X October 2025
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Homologous Structures: A Reappraisal of Evolutionary
Interpretation
Huzefa Jivanjee
Aljamea-tus-Saifiyah, Nairobi
DOI: https://dx.doi.org/10.47772/IJRISS.2025.910000703
Received: 02 November 2025; Accepted: 10 November 2025; Published: 21 November 2025
ABSTRACT
This paper explores homologous structures as a point of dialogue between evolutionary biology and Islamic
thought. While evolution interprets these similarities as evidence of common ancestry, Islamic perspective views
them as signs of Divine unity and wisdom. Drawing on the works of Darwin, Paley and Rasail Ikhwan al-Safa,
the paper puts homology within the context of epistemological pluralism. It proposes that science and faith, when
approached holistically, are not in conflict but rather offer harmonising insights into creation.
Keywords: Evolution, epistemological pluralism, Rasail Ikhwan al-Safa, Islamic perspective, homologous
structures
INTRODUCTION
The relationship between Islam and the theory of evolution has long been the centre of scholarly and theological
debate. One of the main areas of tension arises from the way evolutionary theory frames causation. From a
scientific perspective, evolution explains the development and diversification of species through natural
processes, including genetic variation, mutation and natural selection. It does not recognise Allah Ta’ala as the
cause of these processes. This can appear to conflict with the Islamic belief that Allah Ta’ala is the creator of all
things.
Objective
The objective of this paper is to explore how the Islamic perspective interprets homologous structures as
reflections of Divine unity, thereby demonstrating a profound harmony between science and faith.
Background to the Problem
Darwin (1859) placed homologous structures as evidence of shared ancestry and evolutionary processes. While
compelling scientifically, this view leaves out acknowledging Allah Ta’ala as the Creator, which raises concerns
for Islamic thought. Important sources like Rasail Ikhwan al-Safa and the teachings of the Duat Kiram
RA
stress
that the order and similarity in nature point directly to the Divine wisdom. Hence, homologous structures can be
seen as both biological evidence and signs of Divine intervention, as well as a manifestation of unity in diversity.
The challenge lies in reconciling these perspectives so that scientific explanations are not seen as a threat to faith,
but rather as a means of understanding creation.
Homologous Structure: Darwinian Perspective
According to Darwin, humans and all other species on Earth share a common ancestry, much like members of an
extended family tree. Anatomists in the mid-19th century increasingly recognised that the diversity of life shared
fundamental structural patterns, despite the apparent differences in form and function (Darwin, 1859).
For example, the forelimbs of different species exhibit similar homologies. A seal uses its flippers for aquatic
locomotion, a bat for flight, and humans utilise their arms for tasks such as cooking, writing and driving. Although
these appendages perform distinct functions, they share a deep structural similarity. Each begins with a long bone
(the humerus) extending from the shoulder, followed by two parallel bones (the radius and ulna) that connect to
the elbow. This structure ends in a cluster of wrist bones and five digits (Carroll, 1997).
INTERNATIONAL JOURNAL OF RESEARCH AND INNOVATION IN SOCIAL SCIENCE (IJRISS)
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The relative proportions of these bones differ across species. For instance, a seal’s humerus is short, while a bat’s
is elongated. Nonetheless, the consistent arrangement of these skeletal elements across taxa underscores the
principle of homology. Naturalists have termed this similarity ‘homology,’ reflecting the shared ancestry of these
diverse species (Hall, 2007). Similarly, Al-Jahiz approached animal classification scientifically, arranging them
in a linear series from the simplest to the most complex. He grouped them based on similarities and further divided
them into sub-groups to identify the ultimate unit within the species. This approach paralleled Carolus Linnaeus’s
later development of the binomial nomenclature system, which also categorised organisms based on observable
traits (Reid, 2009). However, according to Zimmer and Emlen (2016), many naturalists believed that this nested
hierarchy reflected a preexisting structure in God’s mind that was represented in creation.
In the decades following Darwin, the study of homology was further refined by comparative anatomists and
evolutionary biologists. Owen (1843), who first applied the term homology’ to biology and distinguished it from
‘analogy,defined homology as similarity of structure due to shared origin, in contrast with analogy, which arises
from similar function without common ancestry. Later, advances in genetics and molecular biology expanded the
concept of homology beyond anatomy to include genetic and developmental similarities. For example, Mayr
(1982) emphasised the role of evolutionary mechanisms in shaping homologous traits, while Hall (2007)
demonstrated how evolutionary developmental biology, ‘evo-devo’, explains the genetic and embryological
foundations of homologous structures across species. Together, these contributions deepened and broadened
Darwin’s original insights, confirming homology as a central concept in evolutionary theory.
Figure 1: Humans, seals, and bats use their limbs for different purposes, yet their bone numbers and
arrangements are the same. Darwin viewed this similarity as evidence of common ancestry.
Reference: Zimmer, C., & Emlen, D. J. (2016). Evolution: Making sense of life (2nd ed.). W. H. Freeman and
Company.
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Furthermore, Darwin’s insight that homologies are often most visible in embryonic stages has been confirmed
by modern evolutionary biology. As Zimmer and Emlen (2016) explain, vertebrate embryos share common
developmental structures, such as pharyngeal arches, that later differentiate into very different adult features,
including gills in fish or components of the jaw and ear in mammals. This pattern suggests that embryonic
similarities reflect a shared ancestry, with subsequent modification shaping species-specific traits. Building on
Darwin’s observations, von Baer (1828) emphasised that vertebrate embryos pass through comparable stages
before diverging, while contemporary evo-devo research has revealed that conserved genetic pathways, such as
Hox genes, govern the formation of homologous structures (Carroll, 1997; Hall, 2007). Together, these findings
demonstrate that embryology not only preserves evidence of evolutionary history but also provides a mechanistic
basis for understanding how homologies arise and transform over time.
Figure 2: Fishes have a series of branching blood vessels to absorb oxygen in their gills. Human embryos (at 29
days) develop blood vessels in a similar arrangement, but later, the vessels change to allow us to absorb oxygen
through our lungs.
Reference: Zimmer, C., & Emlen, D. J. (2016). Evolution: Making sense of life (2nd ed.). W. H. Freeman and
Company.
A Reappraisal of Evolutionary Interpretation
If one leans on epistemological pluralism in understanding that there is not just one way of knowing or making
sense of the world (Alcoff, 2007). It allows us to explore alternative and meaningful insights. That is, one may
also conclude from the homologous structures that Allah Ta’ala has created living organisms in a fascinating
variety of forms, but without exception, all the creatures of this vast and varied living world have similarities.
This reflects the unity of the Creator and helps us understand the concept of unity in diversity. This can be
elaborated from a philosophical standpoint, such order and harmony suggest that nature operates with purpose
and direction, not by chance. Just as two scripts written by the same individual can be recognised by their
handwriting style, the similarities in the structure of limbs across humans, seals, and bats point not only to a
common design but ultimately to one Creator, Allah Ta’ala. Therefore, it is not sufficient to state that all species
share a common ancestor; an alternative perspective can also be applied, which is to acknowledge the Creator
and seek to understand His wisdom in creation.
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Acknowledging the creator is precisely the direction toward which Imam Ahmed al-Mastur
AS
guides the readers
in Rasail Ikhwan al-Safa. He states:






He explains that the intricate harmony found in creation, from the structure of plants to the diversity of their
forms, colours and fruits, serves as clear evidence of a Creator. He further argues that such an order cannot arise
from the mere interaction of opposing elements without deliberate intent and purpose.
Similarly, Robert Hooke (1665), assistant to Thomas Willis and later a physicist, argued that God furnished each
plant and animal with ‘all kinds of contrivances necessary for its own existence and propagation, as a Clockmaker
might make a Set of Chimes to be a part of a Clock’ (Ayala, 2013, p. 509). This perspective, which gained
increasing influence in the eighteenth century, later became known as natural theology.
One of the most influential formulations of natural theology was articulated by William Paley (1802) in his work
Natural Theology, or Evidences of the Existence and Attributes of the Deity Collected from the Appearances of
Nature. Paley invited readers to imagine encountering a watch while walking across a heath. Unlike a rock, which
might be dismissed as a natural part of the environment, the watch, with its intricate organisation of parts and
clear function, would immediately suggest intentional design. For Paley, the complexity and purposeful
arrangement of biological structures similarly indicated the work of a Divine Creator.
Paley extended this analogy by cataloguing anatomical structures that displayed remarkable complexity and
functionality. He argued that, just as a watch implies a watchmaker, the intricate design of life implies a Creator.
For instance, he compared the human eye to a telescope, both of which rely on the same physical laws to focus
light through lenses (Paley, 1802).
Likewise, Imam Ahmad al-Mastur
AS
repeatedly draws attention to Allah Ta’ala’s wisdom in endowing every
creature with structures that are perfectly suited to its needs and environment. In Rasail Ikhwan al-Safa, he states:


This principle highlights the functional precision in creation: no organ is random, and every structure is formed
with purpose. When considered in the context of homologous structures, this perspective explains anatomical
variation. For instance, although the humerus bone exists across different species, its form is according to the
alignment of the specific functions each creature is intended to fulfil.
If human beings were to possess a humerus shaped like that of a bat, elongated to support wings, they would not
be able to carry out the diverse range of daily activities that require strength and skill, such as lifting, grasping,
or writing. Conversely, the bats humerus is perfect for flight, a function central to its survival. Thus, what may
appear as a mere anatomical difference is, in fact, a manifestation of divine wisdom: ensuring that each species
can prosper and benefit within its domain. As Behe (1996) argues, biological systems exhibit complexity,
meaning that each part of a structure is essential and cannot be removed without rendering the whole non-
functional. This implies that organs and faculties are never superfluous but are precisely arranged for purpose, a
view that aligns with the Ikhwan al-Safa’s principle that Allah Ta’ala’s wisdom grants no creature an organ it
does not need.
Paley’s analogy, however, has been strongly critiqued by modern evolutionary biologists. Dawkins (1986), in
The Blind Watchmaker, argued that Paley’s reasoning rests on a false assumption: that complexity must
necessarily imply a designer. Instead, Dawkins proposed that natural selection itself functions as a ‘blind
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watchmaker, capable of producing intricate biological adaptations without foresight, planning, or purpose.
Whereas Paley saw complexity as direct evidence of divine craftsmanship, Dawkins insisted that evolution by
cumulative selection explains how small, gradual changes accumulate into sophisticated biological structures. In
his view, the apparent design in nature is an illusion generated by blind evolutionary processes rather than
intentional creation. This contrast illustrates the ongoing tension between theological interpretations of natural
order and scientific accounts of evolutionary mechanisms.
By contrast, al-Dai al-Ajal al-Fatemi Syedna Aali Qadr Mufaddal Saifuddin
TUS,
during Ashara Mubarakah 1447
H (2025), emphasised the importance of understanding the relationship between science and faith. He narrated
that al-Dai al-Ajal al-Fatemi Syedna Taher Saifuddin
RA
, the 51st al-Dai al-Mutlaq, a distinguished scholar,
theologian, and the luminary of Aljamea-tus-Saifiyah, initiated his tenure with an emphasis on the educational
and spiritual reclamation of his followers. When asked whether scientific advancements posed a threat to faith,
he clarified that such a view arises from a limited perspective. He explained that, when approached correctly,
science and faith are not in conflict but in harmony. Scientific discoveries, rather than undermining faith, unveil
dimensions already encompassed within it. Any perceived contradiction stems from human misunderstanding or
misinterpretation of science. In reality, science serves to deepen and reinforce one’s faith.
Syedna al-Dai al-Ajal
TUS
highlights the essential qualities one should possess while contemplating the creation.
Imam Ahmed al-Mastur
AS
expounds those qualities in Rasail Ikhwan al-Safa. He states:






Therefore, it can be inferred that individuals who do not cultivate essential qualities, such as moral integrity,
clarity of thought, precision in observation, and rigour in inquiry, are less likely to apprehend the underlying
coherence between scientific knowledge and faith. Moral integrity here refers to an openness to truth, honesty in
acknowledging evidence, and humility in recognising the limits of one’s own understanding. As McIntyre (2019)
notes, the strength of science lies not only in its methods but in the attitude of honesty that scientists bring to their
work. Clarity of thought requires the ability to distinguish core principles from superficial reasoning. Precision
in observation, as Chalmers (2013) explains, requires a careful attention to detail and a willingness to let reliable
evidence guide conclusions rather than assumptions. Likewise, rigour in inquiry involves perseverance and
intellectual discipline, pushing beyond surface-level interpretations to a deeper understanding. In the absence of
these attributes, the relationship between science and faith may be easily misinterpreted, leading to their
perception as mutually incompatible domains.
Suggestions and Further Reading
Future discussion can be extended by examining other biological concepts, such as embryology, adaptation, and
ecological interdependence, as additional points of dialogue between science and faith.
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