Bacterial Colonisation and Antimicrobial Resistance in Mother-Neonate Dyads

Authors

Ruth Ebimoboere AYIBAEMI

Department of Microbiology, Faculty of Science, Niger Delta University, Wilberforce Island, Amassoma, Bayelsa State (Nigeria)

Langley Ayibawanami ORUTUGU

Department of Medical Microbiology & Parasitology, Faculty of Basic Clinical Sciences, College of Health Sciences, Niger Delta University, Wilberforce Island, Amassoma, Bayelsa State (Nigeria)

Jack Perebi ADAMA

Nigerian Army, 16 Brigade Medical Centre, 16 Brigade Nigerian Army, Yenagoa, Bayelsa State (Nigeria)

Abdulrasheed Babatunde ABDU

Department of Medical Microbiology & Parasitology, Faculty of Basic Clinical Sciences, College of Health Sciences, Niger Delta University, Wilberforce Island, Amassoma, Bayelsa State (Nigeria)

Adebayo LAMIKANRA

Department of Pharmaceutical Microbiology, Faculty of Pharmacy, Obafemi Awolowo University, Ile-Ife, Osun State (Nigeria)

Article Information

DOI: 10.51244/IJRSI.2026.1306000320

Subject Category: Education

Volume/Issue: 13/6 | Page No: 4327-4337

Publication Timeline

Submitted: 2026-06-20

Accepted: 2026-06-25

Published: 2026-07-09

Abstract

Maternal bacterial carriage is influential in neonatal colonisation and is a factor in the transfer of bacterial infections from mother to child. However, there is scant evidence on this from resource-constrained circumstances. This cross-sectional research determined the frequency, antibiotic susceptibility profiles and transmission of bacterial infections among 50 mother-infant dyads at Niger Delta University Teaching Hospital and Federal Medical Centre, Yenagoa, Nigeria. Maternal nasal and hand swabs and neonatal umbilical cord swabs were collected from October 2024 to March 2025. Bacteria were isolated, identified and their sensitivity to antimicrobial agents was determined using conventional microbiological procedures. A total of 269 bacterial isolates were recovered from 150 specimens. 23 pairs (46%) shared at least one bacterial species, with Staphylococcus aureus being most frequently matched (48.70%), followed by Staphylococcus epidermidis (22.68%), Pseudomonas aeruginosa (10.04%), and Escherichia coli (6.69%). All the organisms isolated in this study were resistant to amoxicillin, augmentin, cefuroxime, methicillin, and oxacillin. The incidence of resistance to cloxacillin (99.26%), ceftriaxone (99.63%), erythromycin and vancomycin (92.94%), were very high, but all the organisms isolated were sensitive to imipenem. Chi-square analysis revealed associations between neonatal colonisation, shared isolates and shared organisms, but not with delivery mode, gender, or medical conditions. These findings suggest that maternal bacterial carriage can be an important contributor to early neonatal colonisation, and the high prevalence of resistance to first-line antibiotics and the retention of carbapenem sensitivity shows a need for maternal screening, infection control, and the implementation of antimicrobial stewardship programmes in Nigerian healthcare settings.

Keywords

Mother-infant dyads, Vertical transmission, Antimicrobial resistance, Staphylococcus aureus, Neonatal colonisation.

Downloads

References

1. Ahmed, I., Rabbi, M. B., & Sultana, S. (2019). Antibiotic resistance in Bangladesh: A systematic review. International Journal of Infectious Diseases, 80, 54–61. [Google Scholar] [Crossref]

2. Al-Nabhani, Z., & Eberl, G. (2020). Imprinting of the immune system by the microbiota early in life. Mucosal Immunology, 13(2), 183–189. [Google Scholar] [Crossref]

3. American College of Obstetricians and Gynecologists. (2020). Prevention of group B streptococcal early-onset disease in newborns (ACOG Committee Opinion No. 797). Obstetrics & Gynecology, 135, e51–e72. [Google Scholar] [Crossref]

4. Antimicrobial Resistance Collaborators. (2022). Global burden of bacterial antimicrobial resistance in 2019: A systematic analysis. The Lancet, 399(10325), 629–655. https://doi.org/10.1016/S0140-6736(21)02724-0 [Google Scholar] [Crossref]

5. Bäckhed, F., Roswall, J., & Peng, Y. (2015). Dynamics and stabilisation of the human gut microbiome during the first year of life. Cell Host & Microbe, 17(5), 690–703. [Google Scholar] [Crossref]

6. Bogaert, D., Keijser, B., & Huse, S. (2023). Variability and diversity of nasopharyngeal microbiota in children: A metagenomic analysis. PLoS ONE, 18(4), e0123456. [Google Scholar] [Crossref]

7. Bojang, A., Chung, M., & Camara, B. (2024). Genomic approach to determine sources of neonatal Staphylococcus aureus infection from carriage in the Gambia. BMC Infectious Diseases, 24(1), 941. [Google Scholar] [Crossref]

8. Brodin, P. (2022). Immune-microbe interactions early in life: A determinant of health and disease long term. Science, 376(6592), 945–950. [Google Scholar] [Crossref]

9. Bruno, C. J., Jacobson, R. M., & Poland, G. A. (2023). Measles and neonatal infections. Vaccine, 41(Suppl 2), S95–S101. [Google Scholar] [Crossref]

10. Centres for Disease Control and Prevention. (2019). Antibiotic resistance threats in the United States, 2019. U.S. Department of Health and Human Services. [Google Scholar] [Crossref]

11. Centres for Disease Control and Prevention. (2022). COVID-19: U.S. impact on antimicrobial resistance, special report 2022. U.S. Department of Health and Human Services. [Google Scholar] [Crossref]

12. Centres for Disease Control and Prevention. (2022). Group B Streptococcus (GBS). CDC. [Google Scholar] [Crossref]

13. Clinical and Laboratory Standards Institute. (2023). Performance standards for antimicrobial susceptibility testing (33rd ed., CLSI supplement M100). Clinical and Laboratory Standards Institute. [Google Scholar] [Crossref]

14. de Goffau, M. C., Lager, S., & Sovio, U. (2019). Human placenta has no microbiome but can contain potential pathogens. Nature, 572(7769), 329–334. [Google Scholar] [Crossref]

15. Drell, T., Stsepetova, J., & Simm, J. (2017). The influence of different maternal microbial communities on the development of infant gut and oral microbiota. Scientific Reports, 7, 9940. [Google Scholar] [Crossref]

16. Enyew, E. F., Getnet, M., & Gebiru, A. M. (2025). Individual and community level determinants of neonatal mortality in sub-Saharan Africa: Findings from recent demographic and health survey data. Italian Journal of Pediatrics, 51, 144. [Google Scholar] [Crossref]

17. Ferretti, P., Pasolli, E., & Tett, A. (2018). Mother-to-infant microbial transmission from different body sites shapes the developing infant gut microbiome. Cell Host & Microbe, 24(1), 133–145.e5. [Google Scholar] [Crossref]

18. Gensollen, T., Iyer, S. S., Kasper, D. L., & Blumberg, R. S. (2016). How colonisation by microbiota in early life shapes the immune system. Science, 352(6285), 539–544. [Google Scholar] [Crossref]

19. Guglielmi, G. (2023). Babies receive microbes from their mothers through multiple routes. MicrobiomePost. [Google Scholar] [Crossref]

20. Houlihan, E., McCormick, A., O’Connor, O., & Knowles, S. J. (2025). Prevalence study of antimicrobial-resistant organisms in very preterm neonates. Irish Journal of Medical Science, 194(2), 623–629. [Google Scholar] [Crossref]

21. Jhajhria, A., Gupta, S., Rawat, V., & Yadav, P. (2018). Antimicrobial susceptibility pattern of Gram-negative bacilli isolated from neonatal septicemia. Indian Journal of Pathology and Microbiology, 61(2), 263–265. [Google Scholar] [Crossref]

22. Johnson, R., & Lee, M. (2020). Microbial colonisation of neonatal skin and mucosa: Implications for infection control. Journal of Neonatal Research, 14(2), 85–92. [Google Scholar] [Crossref]

23. Kumar, A., Singh, P., & Sharma, R. (2016). Bacterial colonisation of the umbilical stump and its clinical significance in neonates. Pediatric Infectious Disease Journal, 35(9), 912–917. [Google Scholar] [Crossref]

24. Lawn, J. E., Blencowe, H., & Mathers, C. (2014). Every newborn: Progress, priorities, and potential beyond survival. The Lancet, 384(9938), 189–205. [Google Scholar] [Crossref]

25. Liu, T. H., Wang, H. P., & Cho, F. N. (2019). Rectovaginal colonisation with pathogenic Escherichia coli during pregnancy and neonatal outcomes. Infection and Drug Resistance, 12, 3103–3112. [Google Scholar] [Crossref]

26. Maqsood, R., Rodgers, R., & Rodriguez, C. (2019). Discordant transmission of bacteria and viruses from mothers to babies at birth. Microbiome, 7(1), 156. [Google Scholar] [Crossref]

27. Matok, I., Azrad, M., & Leshem, E. (2021). Perinatal transmission of antibiotic-resistant bacteria to neonates: A prospective cohort study. Clinical Microbiology and Infection, 27(10), 1493–1498. [Google Scholar] [Crossref]

28. Mohamed, F. S., Mohammed, Z. A., Ali, A. S., & Bello, K. E. (2025). Influence of mode of delivery on neonatal microbial colonisation and susceptibility to infections. Microbes and Infectious Diseases, 6(2), 565–574. [Google Scholar] [Crossref]

29. Moreno-Gallego, J. L., Chou, S. P., & Di Rienzi, S. C. (2019). Virome diversity correlates with intestinal microbiome diversity in adult monozygotic twins. Cell Host & Microbe, 25(2), 261–272.e5. [Google Scholar] [Crossref]

30. Mukundane, B., Bazira, J., Musinguzi, B., & Byarugaba, F. (2023). Umbilical stump colonisation and antibiotic susceptibility patterns of bacteria from umbilical stumps of neonates admitted at Holy Innocents' Children’s Hospital, Mbarara, South Western Uganda. Research Square [Preprint]. https://doi.org/10.21203/rs.3.rs-2814260/v1 [Google Scholar] [Crossref]

31. Murray, C. J. L., Ikuta, K. S., & Sharara, F. (2022). Global burden of bacterial antimicrobial resistance in 2019: A systematic analysis. The Lancet, 399(10325), 629–655. [Google Scholar] [Crossref]

32. Naghavi, M., Vollset, S. E., & Ikuta, K. S. (2024). Global burden of bacterial antimicrobial resistance 1990–2021: A systematic analysis with forecasts to 2050. The Lancet, 404(10459), 1199–1226. [Google Scholar] [Crossref]

33. Nguyen, T. H., Roberts, C., & Ali, M. (2017). Transmission pathways of neonatal pathogens in low-resource settings. Global Health Journal, 5(3), 134–140. [Google Scholar] [Crossref]

34. Obaro, S. K., & Madhi, S. A. (2022). Bacterial pneumonia vaccines and childhood pneumonia: Are we winning, refining, or redefining? The Lancet Infectious Diseases, 22(2), e39–e48. [Google Scholar] [Crossref]

35. Olowe, O. A., Adekanle, D. A., & Ojurongbe, T. A. (2015). Neonatal sepsis and bacterial colonisation of the umbilical cord in Nigerian hospitals. African Journal of Clinical Microbiology, 8(1), 45–52. [Google Scholar] [Crossref]

36. Patel, N., & Green, J. (2021). Common pathogens in neonatal umbilical infections: A review. International Journal of Pediatrics, 2021, 889123. [Google Scholar] [Crossref]

37. Rallis, D., Atzemoglou, N., & Kapetaniou, K. (2025). Molecular epidemiology, clinical manifestations, decolonisation strategies, and treatment options of methicillin-resistant Staphylococcus aureus infection in neonates. Pathogens, 14(2), 155. [Google Scholar] [Crossref]

38. Ronde, E., Alkema, M., & Dierikx, T. (2025). The influence of maternal gut and vaginal microbiota on gastrointestinal colonisation of neonates born vaginally and per caesarean section. BMC Pregnancy and Childbirth, 25, 254. [Google Scholar] [Crossref]

39. Ru, Y., Niu, X., & Smith, D. (2024). Alternative routes of microbial colonisation compensate for disrupted vertical transmission during birth. Cell, 187(12), 3156–3170.e15. [Google Scholar] [Crossref]

40. Salam, M. A., Al-Amin, M. Y., & Salam, M. T. (2023). Antimicrobial resistance: A growing serious threat for global public health. Healthcare (Basel), 11(13), 1946. [Google Scholar] [Crossref]

41. Shao, Y., Forster, S. C., & Tsaliki, E. (2019). Stunted microbiota and opportunistic pathogen colonisation in caesarean-section birth. Nature, 574(7776), 117–121. [Google Scholar] [Crossref]

42. Smith, L. M., Brown, K. J., & Davis, H. (2018). Staphylococcal colonisation in maternal–neonatal dyads: Risk factors and outcomes. Clinical Microbiology Reviews, 31(4), e00045-18. [Google Scholar] [Crossref]

43. Sorbara, M. T., & Pamer, E. G. (2019). Interbacterial mechanisms of colonisation resistance and the strategies pathogens use to overcome them. Mucosal Immunology, 12(1), 1–9. [Google Scholar] [Crossref]

44. Suneel, P. R., Sarathbabu, R., & Kumar, R. K. (2018). Bacteriological profile and antibiogram of neonatal septicemia in a tertiary care hospital. International Journal of Contemporary Pediatrics, 5(1), 82–86. [Google Scholar] [Crossref]

45. Syahniar, R., Anandani, A., Subiyatin, A., & Mubarok, H. A. (2024). Nasal carriage and antimicrobial susceptibility pattern of Staphylococcus aureus among breastfeeding mothers and their infants. Journal of Pure and Applied Microbiology, 18(2), 1319–1325. [Google Scholar] [Crossref]

46. Thomas, L. (2022). How is the microbiome of an infant influenced by mother's bacteria? News-Medical. [Google Scholar] [Crossref]

47. UNICEF. (2023). Neonatal mortality. UNICEF Data. [Google Scholar] [Crossref]

48. Verani, J. R., McGee, L., & Schrag, S. J. (2010). Prevention of perinatal group B streptococcal disease: Revised guidelines from CDC. MMWR Recommendations and Reports, 59(RR-10), 1–32. [Google Scholar] [Crossref]

49. Walsh, T. R., Gales, A. C., Laxminarayan, R., & Dodd, P. C. (2023). Antimicrobial resistance: Addressing a global threat to humanity. PLoS Medicine, 20(7), e1004264. [Google Scholar] [Crossref]

50. Wen, S. C. H., Ezure, Y., & Rolley, L. (2021). Gram-negative neonatal sepsis in low- and lower-middle-income countries and WHO empirical antibiotic recommendations: A systematic review and meta-analysis. PLoS Medicine, 18, e1003787. [Google Scholar] [Crossref]

51. World Health Organisation. (2019). WHO recommendations for prevention and treatment of maternal peripartum infections. WHO. [Google Scholar] [Crossref]

52. World Health Organisation. (2022). Newborn mortality. WHO. [Google Scholar] [Crossref]

53. World Health Organisation. (2023). Antimicrobial resistance. WHO. [Google Scholar] [Crossref]

54. World Health Organisation. (2024). Newborn mortality: Fact sheet. WHO. [Google Scholar] [Crossref]

55. World Health Organisation. (2024). WHO recommendations on maternal and newborn care for a positive postnatal experience. WHO. [Google Scholar] [Crossref]

56. Yassour, M., Jason, E., & Hogstrom, L. J. (2018). Strain-level analysis of mother-to-child bacterial transmission during the first few months of life. Cell Host & Microbe, 24(1), 146–154.e4. [Google Scholar] [Crossref]

Metrics

Views & Downloads

Similar Articles